IL_8RXH_323

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UGUC*GAUGA

Length

9 nucleotides

Bulged bases

8RXH|1|S1|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_323 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.354

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

8RXH|1|S1|U|490
8RXH|1|S1|G|491
8RXH|1|S1|U|492
8RXH|1|S1|C|493
*
8RXH|1|S1|G|504
8RXH|1|S1|A|505
8RXH|1|S1|U|506
8RXH|1|S1|G|507
8RXH|1|S1|A|508

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SD

Putative 40S ribosomal protein S9

Chain SE

40S ribosomal protein S4

Chain SZ

40S ribosomal protein S24