IL_8RXH_327
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- G(OMU)G*UC
- Length
- 5 nucleotides
- Bulged bases
- 8RXH|1|S1|OMU|1621
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_327 not in the Motif Atlas
- Homologous match to IL_8C3A_455
- Geometric discrepancy: 0.1794
- The information below is about IL_8C3A_455
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 94
Unit IDs
8RXH|1|S1|G|1620
8RXH|1|S1|OMU|1621
8RXH|1|S1|G|1622
*
8RXH|1|S1|U|1841
8RXH|1|S1|C|1842
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SC
- Putative 40S ribosomal protein S3
- Chain SN
- Putative 40S ribosomal protein S10
- Chain SS
- Putative ribosomal protein S29
- Chain Se
- 40S ribosomal protein S30
- Chain Sf
- Ubiquitin-60S ribosomal protein L40
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