IL_8RXH_332

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

G(OMC)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_332 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.0868

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8RXH|1|S1|G|2058
8RXH|1|S1|OMC|2059
8RXH|1|S1|C|2060
8RXH|1|S1|5MC|2061
*
8RXH|1|S1|G|2163
8RXH|1|S1|U|2164
8RXH|1|S1|A|2165
8RXH|1|S1|A|2166
8RXH|1|S1|C|2167

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain S3

Transfer RNA; tRNA

Chain S5

mRNA_chain_S5