IL_8S8D_020
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8S8D|1|2|U|312, 8S8D|1|2|C|350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_020 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.0904
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8S8D|1|2|U|310
8S8D|1|2|A|311
8S8D|1|2|U|312
8S8D|1|2|C|313
8S8D|1|2|A|314
8S8D|1|2|A|315
*
8S8D|1|2|U|347
8S8D|1|2|U|348
8S8D|1|2|U|349
8S8D|1|2|C|350
8S8D|1|2|A|351
8S8D|1|2|A|352
8S8D|1|2|C|353
8S8D|1|2|G|354
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S8
- Chain L
- KLLA0A10483p
- Chain X
- KLLA0B11231p
Coloring options: