IL_8SCB_039
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 8SCB|1|5|G|748, 8SCB|1|5|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SCB_039 not in the Motif Atlas
- Geometric match to IL_5TBW_020
- Geometric discrepancy: 0.188
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8SCB|1|5|G|745
8SCB|1|5|A|746
8SCB|1|5|A|747
8SCB|1|5|G|748
8SCB|1|5|G|749
8SCB|1|5|U|750
8SCB|1|5|G|751
8SCB|1|5|G|752
*
8SCB|1|5|U|911
8SCB|1|5|G|912
8SCB|1|5|U|913
8SCB|1|5|U|914
8SCB|1|5|A|915
8SCB|1|5|C|916
8SCB|1|5|A|917
8SCB|1|5|G|918
8SCB|1|5|C|919
Current chains
- Chain 5
- 28S_rRNA
Nearby chains
- Chain M
- 60S ribosomal protein L14
- Chain S
- eL20
Coloring options: