3D structure

PDB id
8SCB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Terminating ribosome with SRI-41315
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CGC*GGUG
Length
7 nucleotides
Bulged bases
8SCB|1|5|G|2343
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8SCB_083 not in the Motif Atlas
Homologous match to IL_5TBW_057
Geometric discrepancy: 0.0569
The information below is about IL_5TBW_057
Detailed Annotation
Isolated cWS basepair
Broad Annotation
Isolated cWS basepair
Motif group
IL_73554.3
Basepair signature
cWW-cWS-cWW
Number of instances in this motif group
10

Unit IDs

8SCB|1|5|C|2290
8SCB|1|5|G|2291
8SCB|1|5|C|2292
*
8SCB|1|5|G|2342
8SCB|1|5|G|2343
8SCB|1|5|U|2344
8SCB|1|5|G|2345

Current chains

Chain 5
28S_rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4
Chain a
60S ribosomal protein L27a
Chain e
eL32
Chain r
eL28

Coloring options:


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