IL_8SCB_162

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_162 not in the Motif Atlas

Geometric match to IL_5TBW_043

Geometric discrepancy: 0.3647

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

8SCB|1|5|G|4769
8SCB|1|5|U|4770
8SCB|1|5|C|4771
8SCB|1|5|C|4772
8SCB|1|5|C|4773
*
8SCB|1|5|G|4862
8SCB|1|5|G|4863
8SCB|1|5|U|4864
8SCB|1|5|C|4865

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13