IL_8SCB_171

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8SCB|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_171 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1667

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8SCB|1|5|G|5000
8SCB|1|5|U|5001
8SCB|1|5|U|5002
*
8SCB|1|5|G|5045
8SCB|1|5|U|5046
8SCB|1|5|C|5047
8SCB|1|5|A|5048
8SCB|1|5|G|5049
8SCB|1|5|C|5050

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain d

eL31