IL_8SCB_192

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

8SCB|1|9|G|113, 8SCB|1|9|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_192 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1686

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8SCB|1|9|U|112
8SCB|1|9|G|113
8SCB|1|9|G|114
8SCB|1|9|U|115
*
8SCB|1|9|A|348
8SCB|1|9|A|349

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

eS8

Chain LL

uS17