IL_8SCB_213
3D structure
- PDB id
- 8SCB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Terminating ribosome with SRI-41315
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8SCB|1|9|A|628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SCB_213 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.1619
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8SCB|1|9|G|611
8SCB|1|9|U|612
8SCB|1|9|G|613
8SCB|1|9|C|614
8SCB|1|9|C|615
8SCB|1|9|A|616
8SCB|1|9|G|617
*
8SCB|1|9|C|624
8SCB|1|9|G|625
8SCB|1|9|G|626
8SCB|1|9|U|627
8SCB|1|9|A|628
8SCB|1|9|A|629
8SCB|1|9|U|630
8SCB|1|9|U|631
8SCB|1|9|C|632
Current chains
- Chain 9
- 18S_rRNA
Nearby chains
- Chain DD
- Ribosomal protein S3
- Chain XX
- uS12
- Chain ee
- eS30
- Chain hh
- mRNA
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
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