IL_8SCB_215

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_215 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1118

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8SCB|1|9|G|665
8SCB|1|9|U|666
8SCB|1|9|U|667
8SCB|1|9|A2M|668
8SCB|1|9|A|669
8SCB|1|9|A|670
8SCB|1|9|A|671
*
8SCB|1|9|U|1161
8SCB|1|9|C|1162

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain XX

uS12

Chain aa

40S ribosomal protein S26