IL_8SCB_295

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_295 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0684

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8SCB|1|5|G|2358
8SCB|1|5|U|2359
8SCB|1|5|A|2360
8SCB|1|5|G|2361
8SCB|1|5|U|2362
8SCB|1|5|A2M|2363
8SCB|1|5|OMG|2364
*
8SCB|1|5|C|3858
8SCB|1|5|G|3859
8SCB|1|5|A|3860
8SCB|1|5|A|3861
8SCB|1|5|A|3862
8SCB|1|5|C|3863

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 1

NC

Chain C

60S ribosomal protein L4

Chain P

uL22