IL_8SCB_296

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_296 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.3007

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8SCB|1|5|A|2832
8SCB|1|5|A|2833
8SCB|1|5|C|2834
8SCB|1|5|A|2835
8SCB|1|5|A|2836
8SCB|1|5|OMU|2837
8SCB|1|5|G|2838
*
8SCB|1|5|C|3850
8SCB|1|5|PSU|3851
8SCB|1|5|A|3852
8SCB|1|5|PSU|3853

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

uL22

Chain d

eL31