3D structure

PDB id
8SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
8SYL|1|a|U|244, 8SYL|1|a|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8SYL_136 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.1052
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

8SYL|1|a|G|242
8SYL|1|a|A|243
8SYL|1|a|U|244
8SYL|1|a|U|245
8SYL|1|a|A|246
8SYL|1|a|G|247
*
8SYL|1|a|C|277
8SYL|1|a|G|278
8SYL|1|a|A|279
8SYL|1|a|C|280
8SYL|1|a|G|281
8SYL|1|a|A|282
8SYL|1|a|U|283
8SYL|1|a|C|284

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain q
30S ribosomal protein S17

Coloring options:


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