3D structure

PDB id
8SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
8SYL|1|a|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8SYL_156 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.096
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

8SYL|1|a|U|684
8SYL|1|a|G|685
8SYL|1|a|U|686
8SYL|1|a|A|687
8SYL|1|a|G|688
*
8SYL|1|a|C|699
8SYL|1|a|G|700
8SYL|1|a|U|701
8SYL|1|a|A|702
8SYL|1|a|G|703
8SYL|1|a|A|704
8SYL|1|a|G|705
8SYL|1|a|A|706

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S11

Coloring options:


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