IL_8SYL_178

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_178 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1187

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8SYL|1|a|C|1303
8SYL|1|a|G|1304
8SYL|1|a|G|1305
8SYL|1|a|A|1306
8SYL|1|a|U|1307
8SYL|1|a|U|1308
*
8SYL|1|a|A|1329
8SYL|1|a|U|1330
8SYL|1|a|G|1331
8SYL|1|a|A|1332
8SYL|1|a|A|1333
8SYL|1|a|G|1334

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13