IL_8T2A_003

3D structure

PDB id

8T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of SCV PTE G18A mutant RNA in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

3.17 Å

Loop

Sequence

GAGGACCUACCCAC*GGAAC

Length

19 nucleotides

Bulged bases

8T2A|1|R|A|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2A_003 not in the Motif Atlas

Geometric match to IL_8T29_002

Geometric discrepancy: 0.09

The information below is about IL_8T29_002

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

IL_19516.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

Number of instances in this motif group

1

Unit IDs

8T2A|1|R|G|17
8T2A|1|R|A|18
8T2A|1|R|G|19
8T2A|1|R|G|20
8T2A|1|R|A|21
8T2A|1|R|C|22
8T2A|1|R|C|23
8T2A|1|R|U|24
8T2A|1|R|A|25
8T2A|1|R|C|26
8T2A|1|R|C|27
8T2A|1|R|C|28
8T2A|1|R|A|29
8T2A|1|R|C|30
*
8T2A|1|R|G|46
8T2A|1|R|G|47
8T2A|1|R|A|48
8T2A|1|R|A|49
8T2A|1|R|C|50

Current chains

Chain R

RNA (90-MER)

Nearby chains