Motif IL_19516.1 Version IL_19516.1 of this group appears in releases 3.80 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-3 | 12-15 | 13-14 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8T29_002 | 8T29 | 0.0000 | 1 | Pseudoknot | R | RNA (90-MER) | G | 17 | G | 19 | G | 20 | A | 21 | C | 22 | C | 23 | U | 24 | A | 25 | C | 26 | C | 27 | C | 28 | A | 29 | C | 30 | * | G | 46 | G | 47 | A | 48 | A | 49 | C | 50 | cWW | ncSH | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGGACCUACCCAC*GGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGACCUACCCA*GAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot (1)
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: