8T2A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8T2A_001 | 1/R/35:41 | Fab BL3-6 binding hairpin with tSW | geometric HL_3IVK_003 HL_64036.2 | |
| HL_8T2A_002 | 1/R/58:63 | UNCG | geometric HL_5Y85_004 HL_61337.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8T2A_002 | 1/R/8:11, 1/R/80:83 | Double sheared | geometric IL_4KZD_002 IL_58355.2 | |
| IL_8T2A_003 | 1/R/17:30, 1/R/46:50 | Pseudoknot | geometric IL_8T29_002 IL_19516.1 | |
| IL_8T2A_004 | 1/R/54:56, 1/R/65:66 | Multiple bulged bases | geometric IL_4V88_392 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8T2A_001 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8T2A_001 | 1/R/14:17, 1/R/50:53, 1/R/67:77 | No text annotation | geometric J3_8T29_001 J3_41596.1 | |
| J3_8T2A_002 | 1/R/14:30, 1/R/46:53, 1/R/67:77 | No text annotation |
Problematic loops
No problematic loops
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