IL_8T2X_059
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8T2X|1|A1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2X_059 not in the Motif Atlas
- Homologous match to IL_8P9A_287
- Geometric discrepancy: 0.0635
- The information below is about IL_8P9A_287
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
8T2X|1|A1|U|1388
8T2X|1|A1|G|1389
8T2X|1|A1|A|1390
8T2X|1|A1|C|1391
8T2X|1|A1|G|1392
8T2X|1|A1|A|1393
8T2X|1|A1|A|1394
8T2X|1|A1|G|1395
*
8T2X|1|A1|U|1415
8T2X|1|A1|C|1416
8T2X|1|A1|G|1417
8T2X|1|A1|A|1418
8T2X|1|A1|A|1419
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- RPL4A isoform 1
- Chain AE
- 60S ribosomal protein L6-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ae
- RPL32 isoform 1
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