IL_8T2X_095
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- GGAG*CGCCAGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- 8T2X|1|A1|A|2468, 8T2X|1|A1|U|2482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2X_095 not in the Motif Atlas
- Geometric match to IL_1MZP_003
- Geometric discrepancy: 0.3566
- The information below is about IL_1MZP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
8T2X|1|A1|G|2466
8T2X|1|A1|G|2467
8T2X|1|A1|A|2468
8T2X|1|A1|G|2469
*
8T2X|1|A1|C|2476
8T2X|1|A1|G|2477
8T2X|1|A1|C|2478
8T2X|1|A1|C|2479
8T2X|1|A1|A|2480
8T2X|1|A1|G|2481
8T2X|1|A1|U|2482
8T2X|1|A1|G|2483
8T2X|1|A1|A|2484
8T2X|1|A1|A|2485
8T2X|1|A1|A|2486
8T2X|1|A1|U|2487
8T2X|1|A1|A|2488
8T2X|1|A1|C|2489
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain E
- RPL1A isoform 1
- Chain eI
- Eukaryotic translation initiation factor 5A
Coloring options: