IL_8T2Y_215
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8T2Y|1|B5|U|1491, 8T2Y|1|B5|A|1516, 8T2Y|1|B5|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2Y_215 not in the Motif Atlas
- Homologous match to IL_8P9A_449
- Geometric discrepancy: 0.4907
- The information below is about IL_8P9A_449
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T2Y|1|B5|G|1488
8T2Y|1|B5|U|1489
8T2Y|1|B5|C|1490
8T2Y|1|B5|U|1491
8T2Y|1|B5|A|1492
8T2Y|1|B5|A|1493
8T2Y|1|B5|C|1494
*
8T2Y|1|B5|G|1513
8T2Y|1|B5|U|1514
8T2Y|1|B5|A|1515
8T2Y|1|B5|A|1516
8T2Y|1|B5|U|1517
8T2Y|1|B5|C|1518
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
Coloring options: