IL_8T2Z_066

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_066 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.0811

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8T2Z|1|A1|U|1645
8T2Z|1|A1|G|1646
8T2Z|1|A1|A|1647
8T2Z|1|A1|A|1648
8T2Z|1|A1|U|1649
*
8T2Z|1|A1|A|1806
8T2Z|1|A1|G|1807
8T2Z|1|A1|G|1808
8T2Z|1|A1|A|1809
8T2Z|1|A1|A|1810

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AZ

60S ribosomal protein L27-A

Chain Ag

60S ribosomal protein L34-A