IL_8T2Z_154

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

8T2Z|1|B5|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_154 not in the Motif Atlas

Homologous match to IL_8C3A_405

Geometric discrepancy: 0.2492

The information below is about IL_8C3A_405

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8T2Z|1|B5|G|204
8T2Z|1|B5|U|205
8T2Z|1|B5|A|206
*
8T2Z|1|B5|U|259
8T2Z|1|B5|U|260
8T2Z|1|B5|U|261
8T2Z|1|B5|U|262
8T2Z|1|B5|C|263

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BI

40S ribosomal protein S8-A