IL_8T2Z_195

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_195 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0778

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8T2Z|1|B5|G|1111
8T2Z|1|B5|G|1112
8T2Z|1|B5|A|1113
8T2Z|1|B5|G|1114
8T2Z|1|B5|U|1115
8T2Z|1|B5|A|1116
8T2Z|1|B5|U|1117
8T2Z|1|B5|G|1118
*
8T2Z|1|B5|U|1129
8T2Z|1|B5|G|1130
8T2Z|1|B5|A|1131
8T2Z|1|B5|A|1132
8T2Z|1|B5|A|1133
8T2Z|1|B5|C|1134

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

60S ribosomal protein L41-A

Chain BX

40S ribosomal protein S23-A