3D structure

PDB id
8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
ACCA*UCCCU
Length
9 nucleotides
Bulged bases
8T2Z|1|B5|C|1158, 8T2Z|1|B5|C|1159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T2Z_198 not in the Motif Atlas
Homologous match to IL_8C3A_449
Geometric discrepancy: 0.1028
The information below is about IL_8C3A_449
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.10
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
16

Unit IDs

8T2Z|1|B5|A|1157
8T2Z|1|B5|C|1158
8T2Z|1|B5|C|1159
8T2Z|1|B5|A|1160
*
8T2Z|1|B5|U|1617
8T2Z|1|B5|C|1618
8T2Z|1|B5|C|1619
8T2Z|1|B5|C|1620
8T2Z|1|B5|U|1621

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BF
Rps5p
Chain BQ
40S ribosomal protein S16-A
Chain Bc
RPS28A isoform 1
Chain MR
messenger RNA
Chain tP
Transfer RNA; tRNA

Coloring options:


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