IL_8T30_062

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T30_062 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.3387

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8T30|1|A1|G|1560
8T30|1|A1|G|1561
8T30|1|A1|C|1562
*
8T30|1|A1|G|1577
8T30|1|A1|C|1578

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AA

60S ribosomal protein L2-A

Chain AG

60S ribosomal protein L8-A

Chain AX

60S ribosomal protein L25