IL_8T30_161
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8T30|1|B5|U|313, 8T30|1|B5|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T30_161 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.0783
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8T30|1|B5|U|311
8T30|1|B5|A|312
8T30|1|B5|U|313
8T30|1|B5|C|314
8T30|1|B5|A|315
8T30|1|B5|A|316
*
8T30|1|B5|U|348
8T30|1|B5|U|349
8T30|1|B5|U|350
8T30|1|B5|C|351
8T30|1|B5|A|352
8T30|1|B5|A|353
8T30|1|B5|C|354
8T30|1|B5|G|355
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BI
- 40S ribosomal protein S8-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: