IL_8T3A_034
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GCA*UAGU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3A_034 not in the Motif Atlas
- Geometric match to IL_4P3T_002
- Geometric discrepancy: 0.2415
- The information below is about IL_4P3T_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01472.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8T3A|1|A1|G|968
8T3A|1|A1|C|969
8T3A|1|A1|A|970
*
8T3A|1|A1|U|1111
8T3A|1|A1|A|1112
8T3A|1|A1|G|1113
8T3A|1|A1|U|1114
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- RPL29 isoform 1
Coloring options: