IL_8T3A_167

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUA*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3A_167 not in the Motif Atlas

Homologous match to IL_8C3A_421

Geometric discrepancy: 0.2524

The information below is about IL_8C3A_421

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46796.2

Basepair signature

cWW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8T3A|1|B5|G|516
8T3A|1|B5|U|517
8T3A|1|B5|A|518
*
8T3A|1|B5|U|533
8T3A|1|B5|A|534
8T3A|1|B5|A|535
8T3A|1|B5|C|536

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BY

40S ribosomal protein S24-A