IL_8T3A_199
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- ACAG*CUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3A_199 not in the Motif Atlas
- Geometric match to IL_1QBP_002
- Geometric discrepancy: 0.375
- The information below is about IL_1QBP_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8T3A|1|B5|A|1234
8T3A|1|B5|C|1235
8T3A|1|B5|A|1236
8T3A|1|B5|G|1237
*
8T3A|1|B5|C|1248
8T3A|1|B5|U|1249
8T3A|1|B5|U|1250
8T3A|1|B5|U|1251
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- RPS15 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
Coloring options: