IL_8T3A_215

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8T3A|1|B5|C|1637, 8T3A|1|B5|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3A_215 not in the Motif Atlas

Homologous match to IL_8P9A_452

Geometric discrepancy: 0.1273

The information below is about IL_8P9A_452

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8T3A|1|B5|C|1636
8T3A|1|B5|C|1637
8T3A|1|B5|G|1638
*
8T3A|1|B5|C|1764
8T3A|1|B5|A|1765
8T3A|1|B5|A|1766
8T3A|1|B5|G|1767

Current chains

Chain B5

18S rRNA

Nearby chains

Chain Ba

RPS26B isoform 1

Chain C5

LSO2 isoform 1