IL_8T3A_235
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUG*UUAUC
- Length
- 8 nucleotides
- Bulged bases
- 8T3A|1|B5|U|1353, 8T3A|1|B5|U|1370, 8T3A|1|B5|A|1371, 8T3A|1|B5|U|1372
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3A_235 not in the Motif Atlas
- Geometric match to IL_5W1H_001
- Geometric discrepancy: 0.2949
- The information below is about IL_5W1H_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71421.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8T3A|1|B5|G|1352
8T3A|1|B5|U|1353
8T3A|1|B5|G|1354
*
8T3A|1|B5|U|1369
8T3A|1|B5|U|1370
8T3A|1|B5|A|1371
8T3A|1|B5|U|1372
8T3A|1|B5|C|1373
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- RPS20 isoform 1
Coloring options: