IL_8T3B_079
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8T3B|1|A1|U|2159, 8T3B|1|A1|U|2175, 8T3B|1|A1|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3B_079 not in the Motif Atlas
- Homologous match to IL_8P9A_311
- Geometric discrepancy: 0.0948
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8T3B|1|A1|C|2156
8T3B|1|A1|G|2157
8T3B|1|A1|A|2158
8T3B|1|A1|U|2159
8T3B|1|A1|G|2160
8T3B|1|A1|G|2161
*
8T3B|1|A1|U|2173
8T3B|1|A1|G|2174
8T3B|1|A1|U|2175
8T3B|1|A1|U|2176
8T3B|1|A1|G|2177
8T3B|1|A1|A|2178
8T3B|1|A1|C|2179
8T3B|1|A1|G|2180
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: