IL_8T3B_186

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8T3B|1|B5|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3B_186 not in the Motif Atlas

Homologous match to IL_8C3A_510

Geometric discrepancy: 0.1266

The information below is about IL_8C3A_510

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

8T3B|1|B5|G|868
8T3B|1|B5|A|869
8T3B|1|B5|C|870
*
8T3B|1|B5|G|957
8T3B|1|B5|U|958
8T3B|1|B5|U|959
8T3B|1|B5|U|960

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain BW

RPS22A isoform 1

Chain Bb

40S ribosomal protein S27-A