IL_8T3B_214
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CUACU*AGAG
- Length
- 9 nucleotides
- Bulged bases
- 8T3B|1|B5|U|1340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3B_214 not in the Motif Atlas
- Homologous match to IL_8C3A_461
- Geometric discrepancy: 0.3184
- The information below is about IL_8C3A_461
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.1
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8T3B|1|B5|C|1339
8T3B|1|B5|U|1340
8T3B|1|B5|A|1341
8T3B|1|B5|C|1342
8T3B|1|B5|U|1343
*
8T3B|1|B5|A|1382
8T3B|1|B5|G|1383
8T3B|1|B5|A|1384
8T3B|1|B5|G|1385
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain BU
- RPS20 isoform 1
- Chain Bg
- Guanine nucleotide-binding protein subunit beta-like protein
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