IL_8T3B_216

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

8T3B|1|B5|U|1353, 8T3B|1|B5|U|1370, 8T3B|1|B5|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3B_216 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.3988

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8T3B|1|B5|G|1352
8T3B|1|B5|U|1353
8T3B|1|B5|G|1354
8T3B|1|B5|C|1355
*
8T3B|1|B5|G|1368
8T3B|1|B5|U|1369
8T3B|1|B5|U|1370
8T3B|1|B5|A|1371
8T3B|1|B5|U|1372
8T3B|1|B5|C|1373

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A

Chain BU

RPS20 isoform 1