IL_8T3B_238

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

8T3B|1|EC|A|6914

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3B_238 not in the Motif Atlas

Geometric match to IL_1JZV_002

Geometric discrepancy: 0.3772

The information below is about IL_1JZV_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8T3B|1|EC|C|6899
8T3B|1|EC|A|6900
*
8T3B|1|EC|U|6913
8T3B|1|EC|A|6914
8T3B|1|EC|G|6915

Current chains

Chain EC

TSV IRES

Nearby chains

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BP

RPS15 isoform 1

Chain DC

Elongation factor 2