IL_8T3B_239
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GUU*AGUGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3B_239 not in the Motif Atlas
- Homologous match to IL_9H3G_015
- Geometric discrepancy: 0.4498
- The information below is about IL_9H3G_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70784.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
8T3B|1|A1|G|176
8T3B|1|A1|U|177
8T3B|1|A1|U|178
*
8T3B|1|A1|A|238
8T3B|1|A1|G|239
8T3B|1|A1|U|240
8T3B|1|A1|G|241
8T3B|1|A1|C|242
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
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