IL_8T3C_047
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UUAAGG*CCUAUA
- Length
- 12 nucleotides
- Bulged bases
- 8T3C|1|A1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3C_047 not in the Motif Atlas
- Geometric match to IL_9AXU_113
- Geometric discrepancy: 0.2761
- The information below is about IL_9AXU_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8T3C|1|A1|U|1167
8T3C|1|A1|U|1168
8T3C|1|A1|A|1169
8T3C|1|A1|A|1170
8T3C|1|A1|G|1171
8T3C|1|A1|G|1172
*
8T3C|1|A1|C|1327
8T3C|1|A1|C|1328
8T3C|1|A1|U|1329
8T3C|1|A1|A|1330
8T3C|1|A1|U|1331
8T3C|1|A1|A|1332
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S ribosomal protein L7-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Ae
- RPL32 isoform 1
- Chain Af
- 60S ribosomal protein L33-A
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