IL_8T3C_104
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GUCCC*GGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3C_104 not in the Motif Atlas
- Geometric match to IL_8C3A_419
- Geometric discrepancy: 0.3139
- The information below is about IL_8C3A_419
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47767.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8T3C|1|A1|G|2770
8T3C|1|A1|U|2771
8T3C|1|A1|C|2772
8T3C|1|A1|C|2773
8T3C|1|A1|C|2774
*
8T3C|1|A1|G|2786
8T3C|1|A1|G|2787
8T3C|1|A1|C|2788
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ao
- 60S ribosomal protein L42-A
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