IL_8T3C_185
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UUUG*CAUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3C_185 not in the Motif Atlas
- Geometric match to IL_7A0S_040
- Geometric discrepancy: 0.3109
- The information below is about IL_7A0S_040
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8T3C|1|B5|U|748
8T3C|1|B5|U|749
8T3C|1|B5|U|750
8T3C|1|B5|G|751
*
8T3C|1|B5|C|798
8T3C|1|B5|A|799
8T3C|1|B5|U|800
8T3C|1|B5|G|801
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BW
- RPS22A isoform 1
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