IL_8T3C_198
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GGAUC*GGCAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3C_198 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.2953
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8T3C|1|B5|G|1041
8T3C|1|B5|G|1042
8T3C|1|B5|A|1043
8T3C|1|B5|U|1044
8T3C|1|B5|C|1045
*
8T3C|1|B5|G|1073
8T3C|1|B5|G|1074
8T3C|1|B5|C|1075
8T3C|1|B5|A|1076
8T3C|1|B5|C|1077
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BA
- 40S ribosomal protein S0-A
- Chain BB
- RPS1A isoform 1
- Chain BN
- 40S ribosomal protein S13
- Chain Ba
- RPS26B isoform 1
- Chain Bb
- 40S ribosomal protein S27-A
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