IL_8T3C_207

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

8T3C|1|B5|G|1228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|B5|A|1224
8T3C|1|B5|U|1225
8T3C|1|B5|A|1226
8T3C|1|B5|A|1227
8T3C|1|B5|G|1228
8T3C|1|B5|G|1229
8T3C|1|B5|A|1230
8T3C|1|B5|U|1231
8T3C|1|B5|U|1232
8T3C|1|B5|G|1233
*
8T3C|1|B5|C|1252
8T3C|1|B5|U|1253
8T3C|1|B5|U|1254
8T3C|1|B5|G|1255
8T3C|1|B5|A|1256
8T3C|1|B5|U|1257
8T3C|1|B5|U|1258
8T3C|1|B5|U|1259

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain BM

40S ribosomal protein S12

Chain Bd

RPS29A isoform 1

Chain Bf

Ubiquitin-40S ribosomal protein S31