IL_8T3D_073
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AAUAAUG*CUA(PSU)
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_073 not in the Motif Atlas
- Homologous match to IL_8P9A_302
- Geometric discrepancy: 0.1095
- The information below is about IL_8P9A_302
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22829.2
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8T3D|1|A1|A|1883
8T3D|1|A1|A|1884
8T3D|1|A1|U|1885
8T3D|1|A1|A|1886
8T3D|1|A1|A|1887
8T3D|1|A1|U|1888
8T3D|1|A1|G|1889
*
8T3D|1|A1|C|2346
8T3D|1|A1|U|2347
8T3D|1|A1|A|2348
8T3D|1|A1|PSU|2349
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ad
- 60S ribosomal protein L31-A
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