IL_8T3D_121

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8T3D|1|A1|U|3056, 8T3D|1|A1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_121 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.0853

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8T3D|1|A1|U|3054
8T3D|1|A1|U|3055
8T3D|1|A1|U|3056
8T3D|1|A1|U|3057
8T3D|1|A1|U|3058
8T3D|1|A1|G|3059
*
8T3D|1|A1|C|3084
8T3D|1|A1|G|3085
8T3D|1|A1|A|3086
8T3D|1|A1|A|3087
8T3D|1|A1|G|3088

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

RPL24A isoform 1

Chain Ad

60S ribosomal protein L31-A