IL_8T3D_195
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_195 not in the Motif Atlas
- Homologous match to IL_8C3A_441
- Geometric discrepancy: 0.0931
- The information below is about IL_8C3A_441
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22198.1
- Basepair signature
- cWW-tSH-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8T3D|1|B5|G|985
8T3D|1|B5|G|986
8T3D|1|B5|G|987
8T3D|1|B5|A|988
8T3D|1|B5|U|989
8T3D|1|B5|C|990
*
8T3D|1|B5|G|1014
8T3D|1|B5|U|1015
8T3D|1|B5|C|1016
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
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