IL_8T3D_200

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_200 not in the Motif Atlas

Homologous match to IL_8P9A_428

Geometric discrepancy: 0.1119

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8T3D|1|B5|G|1111
8T3D|1|B5|G|1112
8T3D|1|B5|A|1113
8T3D|1|B5|G|1114
8T3D|1|B5|U|1115
8T3D|1|B5|A|1116
8T3D|1|B5|U|1117
8T3D|1|B5|G|1118
*
8T3D|1|B5|U|1129
8T3D|1|B5|G|1130
8T3D|1|B5|A|1131
8T3D|1|B5|A|1132
8T3D|1|B5|A|1133
8T3D|1|B5|C|1134

Current chains

Chain B5

18S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain BX

40S ribosomal protein S23-A