IL_8T3D_206
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GGUC*GUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_206 not in the Motif Atlas
- Geometric match to IL_8P9A_327
- Geometric discrepancy: 0.3679
- The information below is about IL_8P9A_327
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8T3D|1|B5|G|1212
8T3D|1|B5|G|1213
8T3D|1|B5|U|1214
8T3D|1|B5|C|1215
*
8T3D|1|B5|G|1448
8T3D|1|B5|U|1449
8T3D|1|B5|U|1450
8T3D|1|B5|C|1451
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain BP
- RPS15 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
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