IL_8T3E_059

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_059 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.1186

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8T3E|1|A1|G|1444
8T3E|1|A1|U|1445
8T3E|1|A1|A|1446
8T3E|1|A1|G|1447
8T3E|1|A1|U|1448
8T3E|1|A1|A|1449
8T3E|1|A1|G|1450
*
8T3E|1|A1|C|2354
8T3E|1|A1|G|2355
8T3E|1|A1|A|2356
8T3E|1|A1|A|2357
8T3E|1|A1|A|2358
8T3E|1|A1|C|2359

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

RPL4A isoform 1

Chain AP

60S ribosomal protein L17-A